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1

Description of Alteromonas abrolhosensis sp. nov., isolated from sea water of Abrolhos Bank, Brazil

Nóbrega, Maria S., Silva, Bruno S., Leomil, Luciana, Tschoeke, Diogo Antonio, Campeão, Mariana E., Garcia, Gizele D., Dias, Graciela A., Vieira, Verônica V., Thompson, Cristiane C., Thompson, Fabiano

Journal:

Antonie van Leeuwenhoek

Année:

2018

Langue:

english

Fichier:

PDF, 652 KB

english, 2018

2

Microbial and Functional Biodiversity Patterns in Sponges that Accumulate Bromopyrrole Alkaloids Suggest Horizontal Gene Transfer of Halogenase Genes

Rua, Cintia P. J., de Oliveira, Louisi S., Froes, Adriana, Tschoeke, Diogo A., Soares, Ana Carolina, Leomil, Luciana, Gregoracci, Gustavo B., Coutinho, Ricardo, Hajdu, Eduardo, Thompson, Cristiane C.,

Journal:

Microbial Ecology

Année:

2018

Langue:

english

Fichier:

PDF, 2.14 MB

english, 2018

3

Halomonas coralii sp. nov. Isolated from Mussismilia braziliensis

Vidal, Livia M. R., Gonçalves, Aline, Venas, Tainá M., Campeão, Mariana E., Calegario, Gabriela, Walter, Juline M., Silva, Bruno S., Garcia, Gizele D., Tschoeke, Diogo A., Swings, Jean, Thompson, Fabi

Journal:

Current Microbiology

Année:

2019

Langue:

english

Fichier:

PDF, 639 KB

english, 2019

4

Glacial-interglacial transitions in microbiomes recorded in deep-sea sediments from the western equatorial Atlantic

Freitas, Lucas, Appolinario, Luciana, Calegario, Gabriela, CampeÃ£o, Mariana, Tschoeke, Diogo, Garcia, Gizele, Venancio, Igor Martins, Cosenza, Carlos A.N., Leomil, Luciana, Bernardes, Marcelo, Albuqu

Journal:

Science of The Total Environment

Année:

2020

Fichier:

PDF, 978 KB

2020

5

STINGRAY: system for integrated genomic resources and analysis

Wagner, Glauber, Jardim, Rodrigo, Tschoeke, Diogo A, Loureiro, Daniel R, Ocaña, Kary ACS, Ribeiro, Antonio CB, Emmel, Vanessa E, Probst, Christian M, Pitaluga, André N, Grisard, Edmundo C, Cavalcanti,

Journal:

BMC Research Notes

Année:

2014

Langue:

english

Fichier:

PDF, 422 KB

english, 2014

6

An Orthology-Based Analysis of Pathogenic Protozoa Impacting Global Health: An Improved Comparative Genomics Approach with Prokaryotes and Model Eukaryote Orthologs

Cuadrat, Rafael R. C., da Serra Cruz, Sérgio Manuel, Tschoeke, Diogo Antônio, Silva, Edno, Tosta, Frederico, Jucá, Henrique, Jardim, Rodrigo, Campos, Maria Luiza M., Mattoso, Marta, Dávila, Alberto M.

Journal:

Omics A Journal of Integrative Biology

Année:

2014

Langue:

english

Fichier:

PDF, 775 KB

english, 2014

7

[ACM Press the 2008 ACM symposium - Fortaleza, Ceara, Brazil (2008.03.16-2008.03.20)] Proceedings of the 2008 ACM symposium on Applied computing - SAC '08 - OrthoSearch

da Cruz, Sergio Manuel Serra, Mattoso, Marta, Batista, Vanessa, Dávila, Alberto M. R., Silva, Edno, Tosta, Frederico, Vilela, Clarissa, Campos, Maria Luiza M., Cuadrat, Rafael, Tschoeke, Diogo

Année:

2008

Langue:

english

Fichier:

PDF, 119 KB

english, 2008

8

Draft Genome Sequence of Micrococcus sp. Strain MS-AsIII-49, an Arsenate-Reducing Isolate from Tropical Metal-Rich Sediment

Costa, Patrícia S., Tschoeke, Diogo A., Silva, Bruno S. O., Thompson, Fabiano, Reis, Mariana P., Chartone-Souza, Edmar, Nascimento, Andréa M. A.

Journal:

Genome Announcements

Année:

2015

Langue:

english

Fichier:

PDF, 152 KB

english, 2015

9

Description ofEndozoicomonas arenoscleraesp. nov. using a genomic taxonomy approach

Appolinario, Luciana R., Tschoeke, Diogo A., Rua, Cintia P. J., Venas, Tainá, Campeão, Mariana E., Amaral, Gilda R. S., Leomil, Luciana, de Oliveira, Louisi, Vieira, Verônica Viana, Otsuki, Koko, Swin

Journal:

Antonie van Leeuwenhoek

Année:

2016

Langue:

english

Fichier:

PDF, 477 KB

english, 2016

10

Erratum to: Description ofEndozoicomonas arenoscleraesp. nov. using a genomic taxonomy approach

Appolinario, Luciana R., Tschoeke, Diogo A., Rua, Cintia P. J., Venas, Tainá, Campeão, Mariana E., Amaral, Gilda R. S., Leomil, Luciana, de Oliveira, Louisi, Vieira, Verônica Viana, Otsuki, Koko, Swin

Journal:

Antonie van Leeuwenhoek

Année:

2016

Langue:

english

Fichier:

PDF, 325 KB

english, 2016

11

Detecting distant homologies on protozoans metabolic pathways using scientific workflows

Cruz, Sergio Manuel Serra Da, Batista, Vanessa, Silva, Edno, Tosta, Frederico, Vilela, Clarissa, Cuadrat, Rafael, Tschoeke, Diogo, Davila, Alberto M.R., Campos, Maria Luiza Machado, Mattoso, Marta

Journal:

International Journal of Data Mining and Bioinformatics

Année:

2010

Langue:

english

Fichier:

PDF, 936 KB

english, 2010

12

Evolutionary Bioinformatics

Genomics, The Comparative, Tschoeke, Diogo a, Nunes, Gisele L, Jardim, Rodrigo, Lima, Joana, Dumaresq, Aline S R, Gomes, Monete R, Pereira, Leandro De Mattos, Loureiro, Daniel R, Stoco, Patricia H, Le

Année:

2014

Langue:

english

Fichier:

PDF, 5.99 MB

english, 2014

13

Pregnant women carrying microcephaly foetuses and Zika virus contain potentially pathogenic microbes and parasites in their amniotic fluid

Tschoeke, Diogo Antonio, de Oliveira, Louisi Souza, Leomil, Luciana, Tanuri, Amilcar, Thompson, Fabiano Lopes

Journal:

BMC Medical Genomics

Année:

2017

Langue:

english

Fichier:

PDF, 654 KB

english, 2017

14

Draft Genome Sequence of Pseudoalteromonas sp. Strain PAB 2.2 Isolated from Abrolhos Bank (Brazil)

Silva, Bruno S. O., Nobrega, Maria S., Leomil, Luciana, Tschoeke, Diogo A., Garcia, Gizele D., Dias, Graciela, Thompson, Cristiane C., Thompson, Fabiano L.

Journal:

Genome Announcements

Année:

2017

Langue:

english

Fichier:

PDF, 124 KB

english, 2017

15

DEVELOPMENT OF STANDARD METHODS FOR ZIKA VIRUS PROPAGATION, TITRATION, AND PURIFICATION

Coelho, Sharton Vinicius Antunes, Neris, Rômulo Leão Silva, Papa, Michelle Premazzi, Schnellrath, Laila Castro, Meuren, Lana Monteiro, Tschoeke, Diogo A., Leomil, Luciana, Verçoza, Brunno Renato Faria

Journal:

Journal of Virological Methods

Année:

2017

Langue:

english

Fichier:

PDF, 1.70 MB

english, 2017

16

Virioplankton Assemblage Structure in the Lower River and Ocean Continuum of the Amazon

Silva, Bruno S. de O., Coutinho, Felipe H., Gregoracci, Gustavo B., Leomil, Luciana, de Oliveira, Louisi S., Fróes, Adriana, Tschoeke, Diogo, Soares, Ana Carolina, Cabral, Anderson S., Ward, Nicholas

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.61 MB

english, 2017

17

Molecular Mechanisms for Microbe Recognition and Defense by the Red Seaweed Laurencia dendroidea

de Oliveira, Louisi Souza, Tschoeke, Diogo Antonio, Magalhães Lopes, Ana Carolina Rubem, Sudatti, Daniela Bueno, Meirelles, Pedro Milet, Thompson, Cristiane C., Pereira, Renato Crespo, Thompson, Fabia

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.51 MB

english, 2017

18

The Comparative Genomics and Phylogenomics of Leishmania Amazonensis Parasite

Tschoeke, Diogo A., Nunes, Gisele L., Jardim, Rodrigo, Lima, Joana, Dumaresq, Aline S. R., Gomes, Monete R., De Mattos Pereira, Leandro, Loureiro, Daniel R., Stoco, Patricia H., De Matos Gliedes, Herb

Journal:

Evolutionary Bioinformatics

Année:

2014

Langue:

english

Fichier:

PDF, 5.87 MB

english, 2014

19

Taxonomic and Functional Metagenomic Signature of Turfs in the Abrolhos Reef System (Brazil)

Walter, Juline M., Tschoeke, Diogo A., Meirelles, Pedro M., de Oliveira, Louisi, Leomil, Luciana, Tenório, Márcio, Valle, Rogério, Salomon, Paulo S., Thompson, Cristiane C., Thompson, Fabiano L., Medi

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 2.23 MB

english, 2016

20

ProtozoaDB 2.0: A Trypanosoma Brucei Case Study

Jardim, Rodrigo, Tschoeke, Diogo, Dávila, Alberto

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 5.82 MB

english, 2017

21

Insights on the freshwater microbiomes metabolic changes associated with the world's largest mining disaster

Cordeiro, Marcelle C., Garcia, Gizele D., Rocha, André M., Tschoeke, Diogo A., Campeão, Mariana E., Appolinario, Luciana R., Soares, Ana C., Leomil, Luciana, Froes, Adriana, Bahiense, Laura, Rezende,

Journal:

Science of The Total Environment

Année:

2019

Langue:

english

Fichier:

PDF, 2.00 MB

english, 2019

22

New Insights on the Terpenome of the Red Seaweed Laurencia dendroidea (Florideophyceae, Rhodophyta)

de Oliveira, Louisi, Tschoeke, Diogo, de Oliveira, Aline, Hill, Lilian, Paradas, Wladimir, Salgado, Leonardo, Thompson, Cristiane, Pereira, Renato, Thompson, Fabiano

Journal:

Année:

2015

Langue:

english

Fichier:

PDF, 974 KB

english, 2015

23

Metagenomic Analysis of the Whole Gut Microbiota in Brazilian Termitidae Termites Cornitermes cumulans, Cyrilliotermes strictinasus, Syntermes dirus, Nasutitermes jaraguae, Nasutitermes aquilinus, Grigiotermes bequaerti, and Orthognathotermes mirim

Grieco, Maria B., Lopes, Fabyano A. C., Oliveira, Louisi S., Tschoeke, Diogo A., Popov, Claudia C., Thompson, Cristiane C., Gonçalves, Luna C., Constantino, Reginaldo, Martins, Orlando B., Kruger, Ric

Journal:

Current Microbiology

Année:

2019

Langue:

english

Fichier:

PDF, 1.01 MB

english, 2019

24

Genomic basis of antibiotic resistance in Vibrio parahaemolyticus strain JPA1

Coutinho, Felipe Hernandes, Tschoeke, Diogo Antonio, Clementino, Maysa Mandetta, Thompson, Cristiane Carneiro, Thompson, Fabiano Lopes

Journal:

Memórias do Instituto Oswaldo Cruz

Année:

2019

Langue:

english

Fichier:

PDF, 253 KB

english, 2019

25

Remote sensing, isotopic composition and metagenomics analyses revealed Doce River ore plume reached the southern Abrolhos Bank Reefs

Francini-Filho, Ronaldo B., Cordeiro, Marcelle C., Omachi, Claudia Y., Rocha, André M., Bahiense, Laura, Garcia, Gizele D., Tschoeke, Diogo, de Almeida, Marcelo G., Rangel, Thiago P., De Oliveira, Bra

Journal:

Science of The Total Environment

Année:

2019

Langue:

english

Fichier:

PDF, 2.71 MB

english, 2019

26

Genomic repertoire of Mameliella alba Ep20 associated with Symbiodinium from the endemic coral Mussismilia braziliensis

Varasteh, Tooba, Moreira, Ana Paula B., Silva Lima, Arthur W., Leomil, Luciana, Otsuki, Koko, Tschoeke, Diogo, Garcia, Gizele, Thompson, Cristiane, Thompson, Fabiano

Journal:

Année:

2019

Langue:

english

Fichier:

PDF, 498 KB

english, 2019

27

Genomic repertoire of Mameliella alba Ep20 associated with Symbiodinium from the endemic coral Mussismilia braziliensis

Varasteh, Tooba, Moreira, Ana Paula B., Silva Lima, Arthur W., Leomil, Luciana, Otsuki, Koko, Tschoeke, Diogo, Garcia, Gizele, Thompson, Cristiane, Thompson, Fabiano

Journal:

Année:

2019

Fichier:

PDF, 498 KB

2019

28

Unlocking the Genomic Taxonomy of the Prochlorococcus Collective

Tschoeke, Diogo, Salazar, Vinicius W., Vidal, Livia, CampeÃ£o, Mariana, Swings, Jean, Thompson, Fabiano, Thompson, Cristiane

Journal:

Microbial Ecology

Année:

2020

Fichier:

PDF, 1.21 MB

2020

29

Oil leakage induces changes in deep-sea sediments of Campos Basin (Brazil)

Appolinario, Luciana R., Tschoeke, Diogo, Calegario, Gabriela, Barbosa, Luiz Henrique, Moreira, Manuel A., Albuquerque, Ana Luiza S., Thompson, Cristiane C., Thompson, Fabiano L.

Journal:

Science of The Total Environment

Année:

2020

Fichier:

PDF, 6.16 MB

2020

30

Rapid screening of marine bacterial symbionts using MALDI-TOF MS

Vidal, Livia M. R., Venas, TainÃ¡ M., GonÃ§alves, Aline R. P., Mattsson, Hannah K., Silva, Raphael V. P., NÃ³brega, Maria S., Azevedo, Gustavo P. R., Garcia, Gizele D., Tschoeke, Diogo A., Vieira, Ver

Journal:

Archives of Microbiology

Année:

2020

Fichier:

PDF, 1.53 MB

2020

31

New bacterial and archaeal lineages discovered in organic rich sediments of a large tropical Bay

Tschoeke, Diogo A., Coutinho, Felipe H., Leomil, Luciana, Cavalcanti, Giselle, Silva, Bruno S., Garcia, Gizele D., dos Anjos, Leandro Candeia, Nascimento, Larissa Borges, Moreira, Luciane S., Otsuki,

Journal:

Marine Genomics

Année:

2020

Fichier:

PDF, 4.20 MB

2020

32

A new genomic taxonomy system for the Synechococcus collective

Salazar, VinÃcius W., Tschoeke, Diogo A., Swings, Jean, Cosenza, Carlos A., Mattoso, Marta, Thompson, Cristiane C., Thompson, Fabiano L.

Journal:

Environmental Microbiology

Année:

2020

Fichier:

PDF, 270 KB

2020

33

Conserved Pigment Profiles in Phylogenetically Diverse Symbiotic Bacteria Associated with the Corals Montastraea cavernosa and Mussismilia braziliensis

Varasteh, Tooba, Hamerski, Lidilhone, Tschoeke, Diogo, Lima, Arthur Silva, Garcia, Gizele, Cosenza, Carlos Alberto Nunes, Thompson, Cristiane, Thompson, Fabiano

Journal:

Microbial Ecology

Année:

2020

Fichier:

PDF, 1.42 MB

2020

34

Vibrio tetraodonis sp. nov.: genomic insights on the secondary metabolites repertoire

Azevedo, Gustavo P. R., Mattsson, Hannah K., Lopes, Grasiele R., Vidal, Livia, CampeÃ£o, Mariana, Tonon, Luciane A. Chimetto, Garcia, Gizele D., Tschoeke, Diogo A., Silva, Bruno S., Otsuki, Koko, Gome

Journal:

Archives of Microbiology

Année:

2020

Fichier:

PDF, 788 KB

2020